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goat anti ephrin a4  (R&D Systems)


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    Structured Review

    R&D Systems goat anti ephrin a4
    Goat Anti Ephrin A4, supplied by R&D Systems, used in various techniques. Bioz Stars score: 94/100, based on 26 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/goat anti ephrin a4/product/R&D Systems
    Average 94 stars, based on 26 article reviews
    goat anti ephrin a4 - by Bioz Stars, 2026-05
    94/100 stars

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    Image Search Results


    Sequence of primers used in genotyping.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: Sequence of primers used in genotyping.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Sequencing, Mutagenesis

    Sequence of primers used in qRT-PCR.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: Sequence of primers used in qRT-PCR.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Sequencing

    EphA4 is upregulated on Cx3cr1-expressing cells in the peri-lesion 3 days post CCI injury. (A–D) Representative confocal images at max z-projection for immunohistochemical analysis for EphA4 (red), EYFP in Cx3cr1-expressing cells (green), and DAPI (blue) at 3 dpi in the ipsilateral cortex of Cx3cr1 CreER /+ mice. CCI injury increased EphA4 expression in cx3cr1 + cells (arrows) in the peri-lesion areas. (E1–E3) Co-localization of EphA4 and EYFP in amoeboid-shaped microglia and/or PDM. Scale bar: (A) 100 μm; (B–D) 50 μm and (E1–E3) 20 μm.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: EphA4 is upregulated on Cx3cr1-expressing cells in the peri-lesion 3 days post CCI injury. (A–D) Representative confocal images at max z-projection for immunohistochemical analysis for EphA4 (red), EYFP in Cx3cr1-expressing cells (green), and DAPI (blue) at 3 dpi in the ipsilateral cortex of Cx3cr1 CreER /+ mice. CCI injury increased EphA4 expression in cx3cr1 + cells (arrows) in the peri-lesion areas. (E1–E3) Co-localization of EphA4 and EYFP in amoeboid-shaped microglia and/or PDM. Scale bar: (A) 100 μm; (B–D) 50 μm and (E1–E3) 20 μm.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Expressing, Immunohistochemical staining

    Microglial EphA4 is upregulated in the damaged cortex after CCI injury. (A) Timeline for generation of GFP bone marrow chimeric mice and CCI injury. Mice were euthanized 3 dpi, and brain sections were used for IHC analysis of TMEM119 and EphA4. (B) Representative confocal images for peripheral-derived immune cells (GFP), infiltrating the ipsilateral injured cortex. (C–G) Representative images of TMEM119 (purple) and EphA4 (red). EphA4 is expressed on amoeboid-resident microglia (white arrow, EphA4 + /GFP − /TMEM119 + ) as well as peripheral-derived GFP immune cells, which also express TMEM119 (yellow arrowhead, EphA4 + /GFP + /TMEM119 + ). (C1–C4) Representative images showing the colocalization of TMEM119 (white) and EphA4 (red) in GFP − microglia. Scale bar in (B) 1,000 μm; (C1–C4) 10 μm.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: Microglial EphA4 is upregulated in the damaged cortex after CCI injury. (A) Timeline for generation of GFP bone marrow chimeric mice and CCI injury. Mice were euthanized 3 dpi, and brain sections were used for IHC analysis of TMEM119 and EphA4. (B) Representative confocal images for peripheral-derived immune cells (GFP), infiltrating the ipsilateral injured cortex. (C–G) Representative images of TMEM119 (purple) and EphA4 (red). EphA4 is expressed on amoeboid-resident microglia (white arrow, EphA4 + /GFP − /TMEM119 + ) as well as peripheral-derived GFP immune cells, which also express TMEM119 (yellow arrowhead, EphA4 + /GFP + /TMEM119 + ). (C1–C4) Representative images showing the colocalization of TMEM119 (white) and EphA4 (red) in GFP − microglia. Scale bar in (B) 1,000 μm; (C1–C4) 10 μm.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Derivative Assay

    Generation of microglia-specific EphA4-deficient mice. (A) Relative EphA4 expression in cortical microglia of naive Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f was measured at 2 weeks and 1-month post tamoxifen (TAM) injection using qRT-PCR. (B) PCR amplification of EphA4 − WT allele (286 bp), loxP-flanked EphA4 allele (390 bp), EphA4-excised allele (250 bp), and Cre (100 bp) in the DNA extracted from Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f microglia at 2 weeks and at 1-month post-tamoxifen injection. Positive (+) control showing loxP-flanked EphA4 allele (390 bp), EphA4-excised allele (250 bp), and Cre (100 bp). M = 100 bp low-scale DNA ladder. (C-G ) qRT-PCR analysis for microglial genes ( Cx3cr1 , C and TMEM119 , D ), neuronal gene ( NeuN , E ), astrocyte gene ( GFAP , F ), and vascular endothelial gene ( VE-cadherin , G ) in isolated microglia, non-adherent remaining cortical cells, as well as whole blood collected from naïve Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f mice. N = 3–6, * p < 0.05, significant difference between the designated groups; nd, not detected.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: Generation of microglia-specific EphA4-deficient mice. (A) Relative EphA4 expression in cortical microglia of naive Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f was measured at 2 weeks and 1-month post tamoxifen (TAM) injection using qRT-PCR. (B) PCR amplification of EphA4 − WT allele (286 bp), loxP-flanked EphA4 allele (390 bp), EphA4-excised allele (250 bp), and Cre (100 bp) in the DNA extracted from Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f microglia at 2 weeks and at 1-month post-tamoxifen injection. Positive (+) control showing loxP-flanked EphA4 allele (390 bp), EphA4-excised allele (250 bp), and Cre (100 bp). M = 100 bp low-scale DNA ladder. (C-G ) qRT-PCR analysis for microglial genes ( Cx3cr1 , C and TMEM119 , D ), neuronal gene ( NeuN , E ), astrocyte gene ( GFAP , F ), and vascular endothelial gene ( VE-cadherin , G ) in isolated microglia, non-adherent remaining cortical cells, as well as whole blood collected from naïve Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f mice. N = 3–6, * p < 0.05, significant difference between the designated groups; nd, not detected.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Expressing, Injection, Quantitative RT-PCR, Amplification, Positive Control, Isolation

    EphA4 expression in microglia at 2 h post-CCI injury. (A) Cx3cr1 CreER / creER EphA4 +/+ , Cx3cr1 CreER /+ EphA4 +/+ , and Cx3cr1 CreER /+ EphA4 f / f mice were intraperitoneally injected with five daily doses of tamoxifen (100 mg/kg) and then subjected to CCI injury 30 days after the last injection. Microglia were isolated from ipsilateral and contralateral cortices for qRT-PCR analysis at 2 h. (B) Relative EphA4 mRNA expression was measured in isolated microglia and non-adherent cells from ipsilateral (ipsi) and contralateral (contra) cortices (Ctx) at 2 h. N = 5, * p < 0.05, significant difference between the designated groups; nd, not detected. (C–E) Representative confocal images for IHC analysis of TMEM119 (white) and EphA4 (red) in GFP bone marrow chimeric WT mice, showing increased EphA4 expression in resident microglia (white arrowhead, EphA4 + GFP − TMEM119 + ). Scale bar = 100 μm.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: EphA4 expression in microglia at 2 h post-CCI injury. (A) Cx3cr1 CreER / creER EphA4 +/+ , Cx3cr1 CreER /+ EphA4 +/+ , and Cx3cr1 CreER /+ EphA4 f / f mice were intraperitoneally injected with five daily doses of tamoxifen (100 mg/kg) and then subjected to CCI injury 30 days after the last injection. Microglia were isolated from ipsilateral and contralateral cortices for qRT-PCR analysis at 2 h. (B) Relative EphA4 mRNA expression was measured in isolated microglia and non-adherent cells from ipsilateral (ipsi) and contralateral (contra) cortices (Ctx) at 2 h. N = 5, * p < 0.05, significant difference between the designated groups; nd, not detected. (C–E) Representative confocal images for IHC analysis of TMEM119 (white) and EphA4 (red) in GFP bone marrow chimeric WT mice, showing increased EphA4 expression in resident microglia (white arrowhead, EphA4 + GFP − TMEM119 + ). Scale bar = 100 μm.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Expressing, Injection, Isolation, Quantitative RT-PCR

    Conditional deletion of microglial EphA4 does not affect acute tissue damage or BBB disruption, following CCI injury. (A) Lesion volume (mm 3 ) 3 dpi was estimated in the ipsilateral cortex of five Nisslstained serial coronal sections of each brain using Cavalieri Estimator from StereoInvestigator. (B–E) Representative mosaic images for the ipsilateral cortices of Nissl-stained sections taken at 4× magnification. (F) Immunoglobulin G (IgG) deposition volume was measured at 3 dpi in the ipsilateral cortex of five serial coronal sections of each brain using Cavalieri Estimator from StereoInvestigator. (G–J) Representative confocal images for the ipsilateral cortices of anti-mouse IgG-stained sections (red) taken at 4× magnification. N = 5–15, * p < 0.05, significant difference between the designated groups. ns, nonsignificant difference was observed.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: Conditional deletion of microglial EphA4 does not affect acute tissue damage or BBB disruption, following CCI injury. (A) Lesion volume (mm 3 ) 3 dpi was estimated in the ipsilateral cortex of five Nisslstained serial coronal sections of each brain using Cavalieri Estimator from StereoInvestigator. (B–E) Representative mosaic images for the ipsilateral cortices of Nissl-stained sections taken at 4× magnification. (F) Immunoglobulin G (IgG) deposition volume was measured at 3 dpi in the ipsilateral cortex of five serial coronal sections of each brain using Cavalieri Estimator from StereoInvestigator. (G–J) Representative confocal images for the ipsilateral cortices of anti-mouse IgG-stained sections (red) taken at 4× magnification. N = 5–15, * p < 0.05, significant difference between the designated groups. ns, nonsignificant difference was observed.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Disruption, Staining

    Conditional deletion of microglial EphA4 does not influence microglia activation or ramification, following CCI injury. (A, B) Representative confocal images at max z-projection for immunostaining of CCR2 (red) and CD68 (white) in the cortical lesion and peri-lesion of Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f mice at 3 dpi. (C, F) Co-localization of CCR2 (red) with Cx3cr1-EYFP (green), showing EYFP + CCR2 − resident microglia in the peri-lesion. (D, G) Microglia ramification in the peri-lesion. EYFP + CCR2 − microglia are either ramified (orange arrowhead), hypertrophic (yellow arrowhead), or amoeboid (cyan arrowhead). (E, H) Representative confocal images, showing CD68 expression (purple) in activated microglia (CD68 + /Cx3cr1 + /CCR2 − , cyan arrow). (I) Quantification of the percentage of resting ramified, activated hypertrophic and activated amoeboid microglia (Cx3cr1 + /CCR2 − ) in the peri-lesion. (J) Quantification of the percentage of CD68 hi microglia (CD68 hi /Cx3cr1 + /CCR2 − ) in the peri-lesion. N = 4–5; ns, nonsignificant difference was observed between different groups.

    Journal: Frontiers in Molecular Neuroscience

    Article Title: Conditional Deletion of EphA4 on Cx3cr1-Expressing Microglia Fails to Influence Histopathological Outcome and Blood Brain Barrier Disruption Following Brain Injury

    doi: 10.3389/fnmol.2021.747770

    Figure Lengend Snippet: Conditional deletion of microglial EphA4 does not influence microglia activation or ramification, following CCI injury. (A, B) Representative confocal images at max z-projection for immunostaining of CCR2 (red) and CD68 (white) in the cortical lesion and peri-lesion of Cx3cr1 CreER /+ EphA4 +/+ and Cx3cr1 CreER /+ EphA4 f / f mice at 3 dpi. (C, F) Co-localization of CCR2 (red) with Cx3cr1-EYFP (green), showing EYFP + CCR2 − resident microglia in the peri-lesion. (D, G) Microglia ramification in the peri-lesion. EYFP + CCR2 − microglia are either ramified (orange arrowhead), hypertrophic (yellow arrowhead), or amoeboid (cyan arrowhead). (E, H) Representative confocal images, showing CD68 expression (purple) in activated microglia (CD68 + /Cx3cr1 + /CCR2 − , cyan arrow). (I) Quantification of the percentage of resting ramified, activated hypertrophic and activated amoeboid microglia (Cx3cr1 + /CCR2 − ) in the peri-lesion. (J) Quantification of the percentage of CD68 hi microglia (CD68 hi /Cx3cr1 + /CCR2 − ) in the peri-lesion. N = 4–5; ns, nonsignificant difference was observed between different groups.

    Article Snippet: Antibodies used are goat anti-EphA4 at 1:100 dilution (R&D systems, Minneapolis, MN, USA), rabbit anti-TMEM119 at 1:100 dilution (Abcam, Waltham, MA, USA), rabbit anti-CCR2 at 1:100 dilution (Abcam, Waltham, MA, USA), rat anti-CD68 at 1:100 dilution (Thermofisher, USA), rabbit anti-Iba1 at 1:200 dilution (FUJIFILM Wako Chemicals U.S.A.

    Techniques: Activation Assay, Immunostaining, Expressing

    Antibodies used in the study

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Antibodies used in the study

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Concentration Assay, Affinity Purification

    Purkinje cell clusters in coronal sections of the left E16.5 mouse cerebellum identified by marker expression profiles. A–I , Sections at different caudorostral levels indicated by percentile. Fluorescent signals of immunostaining for EphA4 (red), Pcdh10 (blue) and FoxP2 (green) are merged. White dashed lines indicate the boundary of recognized clusters. Inset in each panel shows drawings of recognized clusters at half magnification. Names of each cluster were given later based on the lineage analysis (c.f. ). J , Dorsal view of the 3D reconstruction of clusters. Red lines indicate the rostrocaudal level of the section in each panel. Scale bar in A (100 μm) applies to panels A–I . Abbreviations, c-l, c-m, d, dl, l, m, ml, rdl, vl, names of the lineage of clusters; C, caudal; D, dorsal; DCN, deep cerebellar nucleus; L, lateral; M, medial; R, rostral.V, ventral.

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Purkinje cell clusters in coronal sections of the left E16.5 mouse cerebellum identified by marker expression profiles. A–I , Sections at different caudorostral levels indicated by percentile. Fluorescent signals of immunostaining for EphA4 (red), Pcdh10 (blue) and FoxP2 (green) are merged. White dashed lines indicate the boundary of recognized clusters. Inset in each panel shows drawings of recognized clusters at half magnification. Names of each cluster were given later based on the lineage analysis (c.f. ). J , Dorsal view of the 3D reconstruction of clusters. Red lines indicate the rostrocaudal level of the section in each panel. Scale bar in A (100 μm) applies to panels A–I . Abbreviations, c-l, c-m, d, dl, l, m, ml, rdl, vl, names of the lineage of clusters; C, caudal; D, dorsal; DCN, deep cerebellar nucleus; L, lateral; M, medial; R, rostral.V, ventral.

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Marker, Expressing, Immunostaining

    Purkinje cell clusters in coronal sections of the left E17.5 mouse cerebellum identified by marker expression profiles. A–I , Sections at different caudorostral levels indicated by percentile. Fluorescent signals of immunostaining for EphA4 (red), Pcdh10 (blue) and FoxP2 (green) are merged. White dashed lines indicate the boundary of recognized clusters. Inset in each panel shows drawings of recognized clusters at half magnification. Names of each cluster were basically adopted from , but see Results. J , Dorsal view of the 3D reconstruction of clusters. Yellow lines indicate immature fissures. Red lines indicate the rostrocaudal level of the section in each panel. Scale bar in A (100 μm) applies to panels A–I . Abbreviations, fl1-2, fl4, ha2-3, ha4, ha6, hc1, hc2, hp1-2, hp4, ia1-2, ia3-5, ia4, ic1-2, ic3, ip1-2, it2, it3, no1-2, no3, no4, pf1-2, va1, va2-4, vc1, vp1-2, vp3-4, vt1, vt2, vt3, vt4, vt5, names of E17.5 clusters; C, caudal; D, dorsal; DCN, deep cerebellar nucleus; L, lateral; M, medial; R, rostral.V, ventral.

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Purkinje cell clusters in coronal sections of the left E17.5 mouse cerebellum identified by marker expression profiles. A–I , Sections at different caudorostral levels indicated by percentile. Fluorescent signals of immunostaining for EphA4 (red), Pcdh10 (blue) and FoxP2 (green) are merged. White dashed lines indicate the boundary of recognized clusters. Inset in each panel shows drawings of recognized clusters at half magnification. Names of each cluster were basically adopted from , but see Results. J , Dorsal view of the 3D reconstruction of clusters. Yellow lines indicate immature fissures. Red lines indicate the rostrocaudal level of the section in each panel. Scale bar in A (100 μm) applies to panels A–I . Abbreviations, fl1-2, fl4, ha2-3, ha4, ha6, hc1, hc2, hp1-2, hp4, ia1-2, ia3-5, ia4, ic1-2, ic3, ip1-2, it2, it3, no1-2, no3, no4, pf1-2, va1, va2-4, vc1, vp1-2, vp3-4, vt1, vt2, vt3, vt4, vt5, names of E17.5 clusters; C, caudal; D, dorsal; DCN, deep cerebellar nucleus; L, lateral; M, medial; R, rostral.V, ventral.

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Marker, Expressing, Immunostaining

    Definition of E17.5 PC clusters

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Definition of E17.5 PC clusters

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques:

    Nine E14.5 PC clusters, their molecular expression profiles, PC birthdates and fates at E17.5

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Nine E14.5 PC clusters, their molecular expression profiles, PC birthdates and fates at E17.5

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Expressing

    Spatial distribution of E10.5-, E11.5-, and E12.5-born PCs in the E14.5 cerebellum. A–D , Images of coronal sections of the left cerebellum of G2A::Ai9 embryos which had tamoxifen injection at E10.5 (subpanel 1), E11.5 (subpanel 2) and E12.5 (subpanel 3) at different rostrocaudal levels. The top, center and bottom panels show images of the tdTomato fluorescence signal (top), three signals merged, and signals of tdTomato fluorescence (green) and immunostaining signals of Pcd10 (red) and EphA4 (blue) in ( A ), while only the tdTomato fluorescence signal is shown in B–D . The tdTomato signal indicates neurons (mostly PCs) that expressed Neurog2 -CreER at the time of tamoxifen injection. White dashed lines indicate the coutour of the cerebellum. Subpanel 4 shows schematic drawings of identified clusters. Blue and Orange asterisks indicate (position of) the E10.5-PC-sparse and E12.5-PC-sparse clusters, respectively. E , Relative labeling density in nine E14.5 clusters. The plotted data were the average of the tdTomato fluorescence signal in the digital file (0-255) measured in 9-18 square areas of 900 μm 2 located inside the identified cluster in 3-6 sections. The same brightness and contrast adjustment was done in all sections. F , Confocal high-magnification image of immunostaining and tdTomato expression at the junction between the ml and c-l clusters in the AM10.5 G2A::Ai9 embryo, showing expression of tdTomato (E10.5-born neurons) colocalized exactly with Corl2 (PC marker) at the cellular level in the ml cluster. The area of this image is indicated in B4 with a square. Abbreviations, c-l, c-m, d, dl, l, m, ml, rdl, vl, names of E14.5 clusters; C, caudal; D, dorsal; L, lateral; M, medial; R, rostral.V, ventral.

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Spatial distribution of E10.5-, E11.5-, and E12.5-born PCs in the E14.5 cerebellum. A–D , Images of coronal sections of the left cerebellum of G2A::Ai9 embryos which had tamoxifen injection at E10.5 (subpanel 1), E11.5 (subpanel 2) and E12.5 (subpanel 3) at different rostrocaudal levels. The top, center and bottom panels show images of the tdTomato fluorescence signal (top), three signals merged, and signals of tdTomato fluorescence (green) and immunostaining signals of Pcd10 (red) and EphA4 (blue) in ( A ), while only the tdTomato fluorescence signal is shown in B–D . The tdTomato signal indicates neurons (mostly PCs) that expressed Neurog2 -CreER at the time of tamoxifen injection. White dashed lines indicate the coutour of the cerebellum. Subpanel 4 shows schematic drawings of identified clusters. Blue and Orange asterisks indicate (position of) the E10.5-PC-sparse and E12.5-PC-sparse clusters, respectively. E , Relative labeling density in nine E14.5 clusters. The plotted data were the average of the tdTomato fluorescence signal in the digital file (0-255) measured in 9-18 square areas of 900 μm 2 located inside the identified cluster in 3-6 sections. The same brightness and contrast adjustment was done in all sections. F , Confocal high-magnification image of immunostaining and tdTomato expression at the junction between the ml and c-l clusters in the AM10.5 G2A::Ai9 embryo, showing expression of tdTomato (E10.5-born neurons) colocalized exactly with Corl2 (PC marker) at the cellular level in the ml cluster. The area of this image is indicated in B4 with a square. Abbreviations, c-l, c-m, d, dl, l, m, ml, rdl, vl, names of E14.5 clusters; C, caudal; D, dorsal; L, lateral; M, medial; R, rostral.V, ventral.

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Injection, Fluorescence, Immunostaining, Labeling, Expressing, Marker

    Identification of E10.5-PC-sparse and E12.5-PC-sparse clusters in the E14.5-E17.5 cerebellums. A–D , Images of coronal sections of the left TM10.5 and TM12.5 cerebellums at nearly the same level (subpanel 1 and 2, respectively) and schematic drawing of clusters (subpanel 3) and dorsal view of the 3D scheme (subpanel 4) of the E14.5 ( A ), E15.5 ( B ), E16.5 ( C ), and E17.5 ( D ) cerebellums. In subpanels 1 and 2, the tdTomato fluorescence signal (top), three signals merged, and signals of tdTomato fluorescence (green) and immunostaining signals of Pcd10 (red) and EphA4 (blue) are shown from the top to the bottom. Blue and orange colors in dashed lines (in subpanels in 1 and 2), circumscribing lines (in subpanels 3), and clusters in the 3D schemes (in subpanels 4) indicate E10.5-PC-sparse and E12.5-PC-sparse clusters. Black line in the 3D scheme indicates the position of the coronal section in subpanels 1-3. Abbreviations, c-l, c-m, d, dl, l, m, ml, rdl, vl, names of E14.5 clusters; ha2-3, ha4, ha6, hc1, hc2, hp1-2, hp4, ia1-2, ia4, ic1-2, ic3, ip1-2, it2, it3, va1, va2-4, vc1, vp1-2, vp3-4, vt1, vt2, vt3, vt4, vt5, names of E17.5 clusters; C, caudal; D, dorsal; L, lateral; M, medial; R, rostral.V, ventral.

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Identification of E10.5-PC-sparse and E12.5-PC-sparse clusters in the E14.5-E17.5 cerebellums. A–D , Images of coronal sections of the left TM10.5 and TM12.5 cerebellums at nearly the same level (subpanel 1 and 2, respectively) and schematic drawing of clusters (subpanel 3) and dorsal view of the 3D scheme (subpanel 4) of the E14.5 ( A ), E15.5 ( B ), E16.5 ( C ), and E17.5 ( D ) cerebellums. In subpanels 1 and 2, the tdTomato fluorescence signal (top), three signals merged, and signals of tdTomato fluorescence (green) and immunostaining signals of Pcd10 (red) and EphA4 (blue) are shown from the top to the bottom. Blue and orange colors in dashed lines (in subpanels in 1 and 2), circumscribing lines (in subpanels 3), and clusters in the 3D schemes (in subpanels 4) indicate E10.5-PC-sparse and E12.5-PC-sparse clusters. Black line in the 3D scheme indicates the position of the coronal section in subpanels 1-3. Abbreviations, c-l, c-m, d, dl, l, m, ml, rdl, vl, names of E14.5 clusters; ha2-3, ha4, ha6, hc1, hc2, hp1-2, hp4, ia1-2, ia4, ic1-2, ic3, ip1-2, it2, it3, va1, va2-4, vc1, vp1-2, vp3-4, vt1, vt2, vt3, vt4, vt5, names of E17.5 clusters; C, caudal; D, dorsal; L, lateral; M, medial; R, rostral.V, ventral.

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Fluorescence, Immunostaining

    Changes in the molecular expression profile in PC clusters from E14.5 to E17.5

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Changes in the molecular expression profile in PC clusters from E14.5 to E17.5

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Expressing

    Separation and migration of the c-l lineage cluster from E14.5 to E17.5. A , Horizontal sections of the left paravermal and hemispheric cerebellum at around the central level. Sections were immunostained for Corl2 (green channel), EphA4 (blue channel), and Pcdh10 (red channel). Dashed lines circumscribe c-l lineage clusters. Arrowheads indicate the lateral migration of the rostral c-l lineage clusters. B , Dorsal view of the three-dimensional scheme of reconstructed c-l lineage clusters (blue). In the bottom panel, ml and c-m lineage clusters (orange and white) are added. Red transversal line indicate the position of the coronal section shown in ( B ). Black dashed line indicate the contour of the ia3-5 cluster which is located ventral to the it3 cluster in ( B4 ). C , Images of a part of the left cerebellum at the junction between the c-l and c-m lineage clusters in coronal sections. The top image shows merged signals of tdTomato expression, which indicates E10.5-born PCs (green) and immunostaining for EphA4 (blue) and Pcdh10 (red). The bottom subpanel shows only the image of only tdTomato labeling. D , Schematic drawing of clusters shown in C . In A–D , columns of subpanels 1-4 are from E14.5, E15.5, E16.5 and E17.5 cerebellums. Dashed lines indicate c-l lineage clusters that are E10.5-PC-sparse and weak in Pcdh10 expression in A and C . Single asterisks indicate the most medial part of the c-l cluster or the most medial c-l lineage cluster which had higher expression of Corl2 than the rest of the c-l lineage clusters in A–D . Double asterisks indicate the most lateral part of the c-m cluster or the most lateral c-m lineage cluster which intercalated the c-l lineage clusters in A–D . Arrows indicate the direction of cluster migration. Scale bar in C1 (100 μm) applies to C1–C4 . Abbreviations, c-l, c-m, d, ml, names of E14.5 clusters; ha4, ia1-2, ia3-5, ia4, ic1-2, ic3, ip1-2, it2, it3, va2-4, names of E17.5 clusters; C, caudal; D, dorsal; L, lateral; M, medial; R, rostral.V, ventral.

    Journal: eNeuro

    Article Title: Common Origin of the Cerebellar Dual Somatotopic Areas Revealed by Tracking Embryonic Purkinje Cell Clusters with Birthdate Tagging

    doi: 10.1523/ENEURO.0251-20.2020

    Figure Lengend Snippet: Separation and migration of the c-l lineage cluster from E14.5 to E17.5. A , Horizontal sections of the left paravermal and hemispheric cerebellum at around the central level. Sections were immunostained for Corl2 (green channel), EphA4 (blue channel), and Pcdh10 (red channel). Dashed lines circumscribe c-l lineage clusters. Arrowheads indicate the lateral migration of the rostral c-l lineage clusters. B , Dorsal view of the three-dimensional scheme of reconstructed c-l lineage clusters (blue). In the bottom panel, ml and c-m lineage clusters (orange and white) are added. Red transversal line indicate the position of the coronal section shown in ( B ). Black dashed line indicate the contour of the ia3-5 cluster which is located ventral to the it3 cluster in ( B4 ). C , Images of a part of the left cerebellum at the junction between the c-l and c-m lineage clusters in coronal sections. The top image shows merged signals of tdTomato expression, which indicates E10.5-born PCs (green) and immunostaining for EphA4 (blue) and Pcdh10 (red). The bottom subpanel shows only the image of only tdTomato labeling. D , Schematic drawing of clusters shown in C . In A–D , columns of subpanels 1-4 are from E14.5, E15.5, E16.5 and E17.5 cerebellums. Dashed lines indicate c-l lineage clusters that are E10.5-PC-sparse and weak in Pcdh10 expression in A and C . Single asterisks indicate the most medial part of the c-l cluster or the most medial c-l lineage cluster which had higher expression of Corl2 than the rest of the c-l lineage clusters in A–D . Double asterisks indicate the most lateral part of the c-m cluster or the most lateral c-m lineage cluster which intercalated the c-l lineage clusters in A–D . Arrows indicate the direction of cluster migration. Scale bar in C1 (100 μm) applies to C1–C4 . Abbreviations, c-l, c-m, d, ml, names of E14.5 clusters; ha4, ia1-2, ia3-5, ia4, ic1-2, ic3, ip1-2, it2, it3, va2-4, names of E17.5 clusters; C, caudal; D, dorsal; L, lateral; M, medial; R, rostral.V, ventral.

    Article Snippet: Goat anti-EphA4 (R&D Systems), goat anti-FoxP2 (Everest Biotech), rabbit anti-Corl2 (provided by Dr. Ono at KAN Research Institute) and rat anti-OL-protocadherin (Millipore) are the primary antibodies used in the majority of experiments.

    Techniques: Migration, Expressing, Immunostaining, Labeling